`algo.rki.Rd`

Evaluation of timepoints with the detection algorithms used by the RKI

```
algo.rkiLatestTimepoint(disProgObj, timePoint = NULL,
control = list(b = 2, w = 4, actY = FALSE))
algo.rki(disProgObj, control = list(range = range,
b = 2, w = 4, actY = FALSE))
algo.rki1(disProgObj, control = list(range = range))
algo.rki2(disProgObj, control = list(range = range))
algo.rki3(disProgObj, control = list(range = range))
```

- disProgObj
object of class disProg (including the observed and the state chain).

- timePoint
time point which should be evaluated in

`algo.rkiLatestTimepoint`

. The default is to use the latest timepoint.- control
control object:

`range`

determines the desired timepoints which should be evaluated,`b`

describes the number of years to go back for the reference values,`w`

is the half window width for the reference values around the appropriate timepoint and`actY`

is a boolean to decide if the year of`timePoint`

also spend`w`

reference values of the past. As default`b`

,`w`

,`actY`

are set for the RKI 3 system.

`algo.rkiLatestTimepoint`

returns a list of class `survRes`

(surveillance result), which
includes the alarm value (alarm = 1, no alarm = 0) for recognizing an
outbreak, the threshold value for recognizing the alarm and
the input object of class disProg.

`algo.rki`

gives a list of class `survRes`

which includes the vector
of alarm values for every timepoint in `range`

, the vector of threshold values
for every timepoint in `range`

for the system specified by `b`

, `w`

and
`actY`

, the range and the input object of class disProg.
`algo.rki1`

returns the same for the RKI 1 system, `algo.rki2`

for the RKI 2 system and `algo.rki3`

for the RKI 3 system.

Using the reference values for calculating an upper limit (threshold),
alarm is given if the actual value is bigger than a computed threshold.
`algo.rki`

calls `algo.rkiLatestTimepoint`

for the values specified
in `range`

and for the system specified in `control`

.
`algo.rki1`

calls `algo.rkiLatestTimepoint`

for the values specified
in `range`

for the RKI 1 system.
`algo.rki2`

calls `algo.rkiLatestTimepoint`

for the values specified
in `range`

for the RKI 2 system.
`algo.rki3`

calls `algo.rkiLatestTimepoint`

for the values specified
in `range`

for the RKI 3 system.

`"RKI 1"`

reference values from 6 weeks ago`"RKI 2"`

reference values from 6 weeks ago and 13 weeks of the year ago (symmetrical around the comparable week).`"RKI 3"`

18 reference values. 9 from the year ago and 9 from two years ago (also symmetrical around the comparable week).

`algo.bayesLatestTimepoint`

and `algo.bayes`

for
the Bayes system.

M. Höhle, A. Riebler, Christian Lang

```
# Create a test object
disProgObj <- sim.pointSource(p = 0.99, r = 0.5, length = 208, A = 1,
alpha = 1, beta = 0, phi = 0,
frequency = 1, state = NULL, K = 1.7)
# Test week 200 to 208 for outbreaks with a selfdefined rki
algo.rki(disProgObj, control = list(range = 200:208, b = 1,
w = 5, actY = TRUE))
# The same for rki 1 to rki 3
algo.rki1(disProgObj, control = list(range = 200:208))
algo.rki2(disProgObj, control = list(range = 200:208))
algo.rki3(disProgObj, control = list(range = 200:208))
# Test for rki 1 the latest timepoint
algo.rkiLatestTimepoint(disProgObj)
```